PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7880_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 356aa    MW: 39245.2 Da    PI: 5.6101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7880_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-13106157155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++++h  +Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +veYI++Lq
  RrC7880_p2 106 QKMSHVTVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVEYISELQ 157
                 6899*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.90E-12103161No hitNo description
SuperFamilySSF474592.62E-17104180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.792105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-13107169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-11111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MQEIISDFLE ECEFVDTSLA GDDLFAILES LEGAGEISST MASTPRDGIA SSKELVKDQI  60
HETSSPKRNK RKRIETDKEE EEEEDGEGEG EGEGEGEEDN KQDGEQKMSH VTVERNRRKQ  120
MNEHLTVLRS LMPCFYVKRG DQASIIGGVV EYISELQQVL QSLEAKKQRK TYAEVLSPRL  180
VPSPRPSPPV LSPRKPPLSP RINHLQIHHH LLPPISPRTP QPTSPYRAHP PQLPLIPQPP  240
LRSYSSLASC STLGDPPPYS PASSSSSPSV SSNHESSVIN ELVANSKSAL ADVEVKFSGA  300
NVLLKTASHK IPGQVMKIIA ALEDLALEIL QVNINSVDET MLNSFTIKVR KNNHPH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532090.0AK353209.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-L21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127184.10.0PREDICTED: transcription factor SPEECHLESS
RefseqXP_013618641.10.0PREDICTED: transcription factor SPEECHLESS
RefseqXP_013714991.10.0PREDICTED: transcription factor SPEECHLESS
RefseqXP_013715672.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C71e-159SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A078E4H10.0A0A078E4H1_BRANA; BnaC02g14500D protein
STRINGBra022638.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78952740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-129bHLH family protein